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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum



ABOUT THIS RECORD

ID: MNEST002444
species: Saccharum hybrid cultivar CoS 767
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar CoS 767 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAATGTTGTCTGGTTCAAGG

miRNA*
TCGGACCAGGCTTCATTCCCC

mismatches: 3
bulges: 0

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pre-miRNA
GGGGGAAGATATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCGCTTGCGATTTAAGGATGATTCGTGCATGGCATGTGTAGTTTT
TATTCCTTGAATCTGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGCAATAGCTTCAAATGATATCGCGGA


dot-bracket secondary structure
.......((((((((((((((.((...((((.((((((..(((((((((.(((((((((....((((((((((.((..(((((...))))).......))
...)))))))))).))))))))).)))))))))..)))))).)))))))))))))))).....)))).....



SIMILARITIES
miRBase sbi-MIR166a: 3e-33

PMRD sbi-miR166a: 3e-33

microPC miR166: 2e-31
UniProt no hits

RFAM mir-166: 6e-38
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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